Sublime has Git markers showing status of Git in project. Git shows correct most of the times but the following seems wrong:
When there are symbolic links (created with ls -s) in the folder, after git add/commit/push, Sublime shows a Git marker on the project folder, although the Git status is all up-to-date.
In the picture above, no more files or folders after wizard.sh.
If you create a symbolic link in a Git directory, then Git will flag that as a new untracked file (unless the name of the symbolic link is set in your .gitignore),
The UI in Sublime Text should then be a blank dot (rather than a blue dot).
See example (text.txt is an untracked symlink)
I found out how to solve the problem. It’s something wrong in Git index, even Git commands don’t show a difference but Sublime.
Using Bash ‘rm’ and then git add, commit won’t work.
Using Git ‘rm’ works:
git pull; git add -A; git commit -a -m msg; git push;
# now rm
git rm sys
git add -A; git commit -a -m msg; git push
# now create back the symbolic link
ln -sT dist sys
git add -A; git commit -a -m msg; git push