I guess the point is there is no easy way to mass convert CRLF across a project via Sublime. It isn't against how Sublime handles CRLF in a view as much as STUser wants to fix an existing project's mix in one shot.
At this point, an external find and replace tool, or in your case Notepad++, may be your best bet to do your one time fix. I guess a Sublime plugin could be written to comb your project and do this and the raw file as well.