sorry for the bump, but haven't found any better fitting problem.
i've sort or less the same problem.
I've this problem using OSX (both 10.7 & 10.8)
- login on a remote server using Transmit
- edit files
- close st2
- refresh folders
- start editing again
Between steps 3 and 4 another person was editing on the same file. These changes weren't in the files I opened the next day. So I got a lot of differences once i did a commit. How can I get rid of this?