I'm about to release the first new version of Package Control since early March. Yikes – that took way too long!
Please spend some time today if you can using the testing version. I am hoping to push out the new version tomorrow, Nov 20th, 2012.
If you can, please test:
The link above covers some of the big additions/fixes. Also there have been fixes for handling upgrading in-use DLL files on Windows, not disabling packages when running upgrade all, handling non-ascii characters in the file path to the SSL CA certs bundle file, plus a whole bunch of other small things.
If you do find any issues, please post them at github.com/wbond/sublime_package_control/issues. Thanks for the help everyone!